Get chromosome names of a bigwig file
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8 weeks ago
grey ▴ 20

I would like to extract the chromosome names from a bigwig (.bw) file. Is there an existing tool/command?

(I need to verify they match the genome annotation file I am working with + diagnose failing multiBigwigSummary)

bigwig • 139 views
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1
Entering edit mode
8 weeks ago
Ram 34k

bigwigInfo --chroms from UCSC Kent Utils (http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/) looks like a good option to do this.

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