Having issue running TransposonPSI
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Entering edit mode
15 months ago
tshittu • 0

Hi,

I have tried running the transposonPSI on our sever several times and always come back with an error message below. Is there anyone that knows how this can be resolved. Your help and contribution would be much appreciated.

(base) taiwo@zetaadmin:/home/programs/repeatmasker/TransposonPSI_08222010$ sudo ./transposonPSI.pl /home/taiwo/Genome_Annotations/funannotate_E34/genome.proteins.fasta prot [sudo] password for taiwo: processing MCOR02_000001-T1.

Building a new DB, current time: 08/26/2021 11:16:32 New DB name: /home/programs/repeatmasker/TransposonPSI_08222010/transposonPSI.14355.zetaadmin.tmp/MCOR02_000001_T1/MCOR02_000001_T1.seq New DB title: transposonPSI.14355.zetaadmin.tmp/MCOR02_000001_T1/MCOR02_000001_T1.seq Sequence type: Protein Keep MBits: T Maximum file size: 1000000000B Adding sequences from FASTA; added 1 sequences in 0.00027585 seconds. blast against /home/programs/repeatmasker/TransposonPSI_08222010/transposon_PSI_LIB/cacta.refSeq CMD: blastpgp -i /home/programs/repeatmasker/TransposonPSI_08222010/transposon_PSI_LIB/cacta.refSeq -d transposonPSI.14355.zetaadmin.tmp/MCOR02_000001_T1/MCOR02_000001_T1.seq -R /home/programs/repeatmasker/TransposonPSI_08222010/transposon_PSI_LIB/cacta.chk -j 1 -e 1e-5 > transposonPSI.14355.zetaadmin.tmp/MCOR02_000001_T1/MCOR02_000001_T1.cacta.refSeq.psitblastn ERROR: recovery from C toolkit checkpoint file format not supported Error blastpgp -i /home/programs/repeatmasker/TransposonPSI_08222010/transposon_PSI_LIB/cacta.refSeq -d transposonPSI.14355.zetaadmin.tmp/MCOR02_000001_T1/MCOR02_000001_T1.seq -R /home/programs/repeatmasker/TransposonPSI_08222010/transposon_PSI_LIB/cacta.chk -j 1 -e 1e-5 > transposonPSI.14355.zetaadmin.tmp/MCOR02_000001_T1/MCOR02_000001_T1.cacta.refSeq.psitblastn 65280 at ./transposonPSI.pl line 142, <$filehandle> line 1. (base) taiwo@zetaadmin:/home/programs/repeatmasker/TransposonPSI_08222010$

Repeatmasker TransposonPSI • 275 views
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