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Recent Replies
Answer: How to compare the quality of assemblies
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colindaven
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Are you sure you have looked into the HiFiasm output files (fasta and GFA) in detail and excluded non-primary contigs, hap1, hap2 and other…
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You can use seqtk to find gaps in a fasta
https://github.com/lh3/seqtk
seqtk gap
Usage: seqtk gap [-l 50] <in.fa>
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> Obviously, running kraken2 after the build is complete does not produce the correct results
What do you get instead? Error/no output? Ha…
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Can you post a screenshot of what you are referring to? Why did you choose to "clean" your data?
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It should be great if I have any assistance in my build up command using trinity package...
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I want reads in a specific short interval, but if I do that with samtools view I also get reads that are spliced over that interval.
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this is names.dmp:![names.dmp][1]
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[1]: /media/images/33cc9a8b-4818-48b4-913d-1c2b2185
[2]: /media/i…
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see also : https://www.biostars.org/p/9537698/ ; https://www.biostars.org/p/9464312/ ; https://www.biostars.org/p/417123/
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what's the gray section ? it's the read you want ? do you only want the reads that end at the splice event (single point location) ?
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yes if there is more than one sample genotyped.
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Is it typical to observe such a profile in the context of diploid organism ?
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Yes you can use ggplot2 to create your own plots from a table of results from a differential methylation analysis. You just need to adapt a…
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This forum is not dedicated to this type of request, there are many online tutorials for creating heatmaps accessible with simple internet …
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