GATK call arm level chromosome copy number variations (cnv)
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7 weeks ago
SunRise2019 ▴ 60

Hi, I am new to GATK and would like to know how to make cnv calls for chromosome arms. Any idea? Thanks.

cna gatk cnv • 135 views
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7 weeks ago
vdauwera ★ 1.1k

You can ask this in the GATK forum, their support team will point you to the information resources you need and assist you if you run into any problems.

https://gatk.broadinstitute.org/hc/en-us/community/topics

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