I'm working with data that counts with gene dependency scores, which basically measures the gene effects and I have the desire to compare scores between two groups.
I created an initial Venn diagram and an upset plot, I was wondering if it would be interesting to also conduct the following analysis and have the following visualizations:
- PCA Analysis to see which gene effects cluster together
- Heatmap two see general distribution
Not sure what other types of plots or analysis might be interesting to do, just on a side note there are about 17000 genes and 50 cell lines respectively per group.