Retrieve codon alignment from the tblast module of biopython
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6 weeks ago

Hello,

I am currently facing an issue when making BLAST queries using the Biopython library. When using the website, once I made my tblastn query, I just have to go under downloads and select FASTA (aligned sequences) to have my desire output. But with Biopython I can only have the proteine sequences and not the nucleotides/codons sequences. Do you know how I can retrieve those once I have my XML output from tblastn over biopython?

Thank you very much for your time,

Jérémy

tblast BLAST biopython • 80 views
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