I am currently facing an issue when making BLAST queries using the Biopython library. When using the website, once I made my tblastn query, I just have to go under downloads and select FASTA (aligned sequences) to have my desire output. But with Biopython I can only have the proteine sequences and not the nucleotides/codons sequences. Do you know how I can retrieve those once I have my XML output from tblastn over biopython?
Thank you very much for your time,