Tool that finds direct DNA repeats with mismatches
0
0
Entering edit mode
2.6 years ago
ybendana • 0

Is there an open source standalone tool that finds de novo direct interspersed DNA repeats in a small sequence and allows for mismatches? Something similar to repeat-match.

repeats • 788 views
ADD COMMENT
0
Entering edit mode
ADD REPLY
0
Entering edit mode

I saw that post already and it was very helpful. I went through the tools and that's how I found repeat-match via the MUMmer answer. Unless I'm mistaken, the only tool I found that matches what I'm looking for (direct interspersed repeats, not tandem or consecutive repeats) is REPuter but it requires a license for the standalone version. My sequence is small and not a genome. I'll add more details to my question.

ADD REPLY

Login before adding your answer.

Traffic: 2289 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6