How can I do this oncoplot using complexheatmap

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2.6 years ago

573356741 • 0

enter image description here The bottom bar is sample-type, and I want to sorted by sample-type and column_order of one type are automatically adjusted. How to get the oncoplot? Thanks

oncoplot complexheatmap • 2.0k views

ADD COMMENT • link 2.6 years ago by 573356741 • 0

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I think your answer is too general, try implementing it using the reference manual and ask specific questions if you have any. For starters, you might want to generate a matrix that follow your requirements (sorting etc.) and plot it using ComplexHeatmap

ADD REPLY • link 2.6 years ago by Asaf 10k

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yeah，I want to get a oncoplot like this. And I can generate a matrix with wrong sorting. I can't get a right sorted list. enter image description here

ADD REPLY • link 2.6 years ago by 573356741 • 0

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So your question is how to sort the matrix columns according to sample type?

ADD REPLY • link 2.6 years ago by Asaf 10k

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Please follow the tutorial with the data provided in the tutorial, then modify your own data so that it can also be used to generate the plot: https://jokergoo.github.io/ComplexHeatmap-reference/book/oncoprint.html

ADD REPLY • link 2.6 years ago by Kevin Blighe 87k

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yeap，thanks.

ADD REPLY • link 2.6 years ago by 573356741 • 0

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