R package for structural variation representation ?
1
0
Entering edit mode
11 months ago
Picasa ▴ 610

Hi all,

I would like to draw some figures that represent structural variations between 2 species. Ideally it would take as input mummer's result.

I know we can use mummerplot but I would like to distinguish the different structural variations with colors.

Basically I am looking to draw this kind of figures (a and c)

https://media.springernature.com/m685/springer-static/image/art%3A10.1038%2Fs41588-020-00771-1/MediaObjects/41588_2020_771_Fig1_HTML.png

Do you have any recommendations ? Thanks !

structural variation mummer • 439 views
ADD COMMENT
2
Entering edit mode
11 months ago

Here are some relevant packages for you - you should be able to make both figures from A and C using these (maybe even solely using the first one):

genoPlotR

gggenomes

ADD COMMENT

Login before adding your answer.

Traffic: 1565 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6