R package for structural variation representation ?
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Entering edit mode
7 weeks ago
Picasa ▴ 610

Hi all,

I would like to draw some figures that represent structural variations between 2 species. Ideally it would take as input mummer's result.

I know we can use mummerplot but I would like to distinguish the different structural variations with colors.

Basically I am looking to draw this kind of figures (a and c)

https://media.springernature.com/m685/springer-static/image/art%3A10.1038%2Fs41588-020-00771-1/MediaObjects/41588_2020_771_Fig1_HTML.png

Do you have any recommendations ? Thanks !

structural variation mummer • 170 views
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2
Entering edit mode
7 weeks ago
benformatics ★ 2.6k

Here are some relevant packages for you - you should be able to make both figures from A and C using these (maybe even solely using the first one):

genoPlotR

gggenomes

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