Kmergenie module readfq not found
1
0
Entering edit mode
9 days ago
A ▴ 10

I have been trying to run kmergenie for my data on ubuntu and every time I enter the code it gives an import error: no module named readfq. I have tried downloading the module from bioconda and when checking the directory it showed that the module was indeed downloaded. However, the error keeps popping up. I have been trying to run the software in a python 2.7 environment and have R installed. I saw there was a bug report regarding this issue on git-hub and that it was resolved. However, I am still facing the error. any help would be greatly appreciated

import error kmergenie module readfq • 209 views
ADD COMMENT
0
Entering edit mode

Have you tried to use python 3.x?

ADD REPLY
0
Entering edit mode

Yes, we tried version 3.6 However, the same error came up

ADD REPLY
0
Entering edit mode

It looks like the build script in bioconda no longer matches how kmergenie should be installed.

ADD REPLY
1
Entering edit mode
5 days ago
A ▴ 10

Found the solution, the error is in bioconda. Upon downloading and installing the software through the tar file on the website instead of downloading and installing from bioconda, the error does not appear.

ADD COMMENT

Login before adding your answer.

Traffic: 2484 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6