I'm trying to identify exons of a gene family from a genomic DNA.
Initially, I've tried mapping the reference gene CDS to the genome to identify the exons. But then I won't be able to obtain the UTRs and only the coding regions.
So can someone suggest a better way for me to identify the exon sequences? Or should I just find a separate way to identify the UTRs, then only combine the UTRs and coding region together to form the exons