miRDeep2.pl error in make_html2.pl
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4 months ago

I have installed

cpan install PDF::API2


And still got error

Can't locate PDF/API2.pm in @INC (@INC contains: /home/nbri/Tikshana/Ath/small_RNA/mirDeep/mirdeep2/lib/perl5 /home/nbri/vaishali/TOMATO_SRNA/new_analysis/mirdeep2-master/lib/perl5 /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64 /perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at /home/nbri/Tikshana/Ath/small_RNA/mirDeep/mirdeep2/bin/make_html2.pl line 25. BEGIN failed--compilation aborted at /home/nbri/Tikshana/Ath/small_RNA/mirDeep/mirdeep2/bin/make_html2.pl line 25

locate PDF/API2.pm

/home/nbri/.cpan/build/PDF-API2-2.041-0/blib/lib/PDF/API2.pm
/home/nbri/.cpan/build/PDF-API2-2.041-0/lib/PDF/API2.pm
/home/nbri/.cpan/build/PDF-API2-2.041-1/blib/lib/PDF/API2.pm
/home/nbri/.cpan/build/PDF-API2-2.041-1/lib/PDF/API2.pm
/home/nbri/.cpan/build/PDF-API2-2.041-2/blib/lib/PDF/API2.pm
/home/nbri/.cpan/build/PDF-API2-2.041-2/lib/PDF/API2.pm
/home/nbri/.cpan/build/PDF-API2-2.041-3/blib/lib/PDF/API2.pm
/home/nbri/.cpan/build/PDF-API2-2.041-3/lib/PDF/API2.pm
/home/nbri/anaconda3/lib/site_perl/5.26.2/PDF/API2.pm
/home/nbri/anaconda3/pkgs/perl-pdf-api2-2.035-pl526_0/lib/site_perl/5.26.2/PDF/API2.pm
/home/nbri/miniconda2/envs/metawrap-env/lib/site_perl/5.26.2/PDF/API2.pm
/home/nbri/miniconda2/pkgs/perl-pdf-api2-2.035-pl526_0/lib/site_perl/5.26.2/PDF/API2.pm


kindly help me to resolve the issue

make_html2.pl miRNA error mirDeep • 281 views
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Your post here is copy pasted from your response in this thread: Mirdeep2 Installation (Error In Make_Html.Pl) but is missing the overarching context, which is that you're running into an error installing mirdeep2. Please don't start a thread with half the context buried elsewhere. Reading your post should suffice for anyone to understand what you're trying to achieve, what you've tried doing so far and where you're running into difficulties.

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Yes, I did so as the thread I replied to is quite old didn't expect any response there what i tried I have already described above in my question. also tried export PERL5LIB=/home/nbri/anaconda3/lib/site_perl/5.26.2/PDF/API2.pm

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