Hi there,
Please, I'm not experienced in this field and I need help. I want to check the ligand-interaction of 2 molecules, but I'm not able to merge the 2 PDB files correctly, because it's like the ligand is not in contact with the protein at the right site as it was shown in the literature. There is another problem, I can only find the molecule (that is supposed to be a ligand) as a protein on PDB, there is any way to convert it to a ligand PDB file?
Thank you in advance.