custom reference panel
0
0
Entering edit mode
13 days ago
raalsuwaidi ▴ 10

Hi all,

i am embarking on creating a custom reference panel by selecting specific samples. my question is how do I select the samples? i can see that the plink distance matrix would be a good option, but otherwise, can you advise what other options are there?

sample impute GWAS • 161 views
ADD COMMENT
1
Entering edit mode

why do you need a reference set of samples?

ADD REPLY
0
Entering edit mode

i want to create a reference panel for imputation, and for that i want to select the most appropriate samples. i a not sure if this is done before, but i searched and couldn't find any. i know i can use PLINK or bcftools to select specific samples, but the trick is that i want to identify the appropriate ones. i was thinking of using the plink distance or matrix option, but is there anything else?

ADD REPLY

Login before adding your answer.

Traffic: 3029 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6