What is the difference between filtering cells before creating Seurat object and after that?
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2.6 years ago
re_raz ▴ 70

I tried filter cells that have unique feature counts over 5000 or less than 350 and > 2% mitochondrial counts before creating Seurat object, and I also tried to do this step after creating Seurat object. The results looked the same. Is there any difference between the two ways that I might not figure out? Which way is the best ?

Seurat filter cells • 823 views
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Both methods are fine.

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Thank you

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