What is the difference between filtering cells before creating Seurat object and after that?
0
0
Entering edit mode
7 days ago
re_raz • 0

I tried filter cells that have unique feature counts over 5000 or less than 350 and > 2% mitochondrial counts before creating Seurat object, and I also tried to do this step after creating Seurat object. The results looked the same. Is there any difference between the two ways that I might not figure out? Which way is the best ?

Seurat filter cells • 183 views
ADD COMMENT
0
Entering edit mode

Both methods are fine.

ADD REPLY
0
Entering edit mode

Thank you

ADD REPLY

Login before adding your answer.

Traffic: 2350 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6