Refseq annotation for processed/unprocessed Pseudogenes
0
0
Entering edit mode
12 days ago
asalimih ▴ 30

Hi, I have extracted the pseudogenes from refseq annotation file. However there is no information about the type of the pseudogene being processed/unprocessed in the gff file. on the other hand ensembl/gencode gff files do have this type of information. the problem is not all gene IDs in the refseq annotation have ensembl counterparts. is there any ncbi annotation database for the type of pseudogenes.

refseq pseudogene annotation genomics • 118 views
ADD COMMENT
1
Entering edit mode

You probably don't have much option but to use what NCBI has in the annotation. Closest what you get from a search is this (LINK).

ADD REPLY

Login before adding your answer.

Traffic: 3079 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6