Fetch HGNC id from gene symbol in python
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2.6 years ago
gopi ▴ 10

Hi, I am having thousands of gene symbols and I want to get their HGNC id's. I tried downloading HGNC rdf file from bioportal and used sparql to fetch most of the gene id's. However, the HGNC rdf from bioportal was last updated almost 10 years back. Is their more efficient way to get gene id's from gene symbols?

python hgnc sparql • 1.4k views
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HGNC data is downloadable. Parse locally with python.

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2.5 years ago
plwhetzel • 0

HGNC has a REST API https://www.genenames.org/help/rest/

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