what does mean this error ? "(ERR): hisat2-align exited with value 1" in mapping long noncoding RNAs

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2.6 years ago

reza • 0

Hello everyone.what does mean this error ? "(ERR): hisat2-align exited with value 1" in mapping long noncoding RNAs.

long-non-coding-RNA lncRNA • 1.6k views

ADD COMMENT • link updated 14 days ago by Ram 43k • written 2.6 years ago by reza • 0

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Post the command line arguments you used.

ADD REPLY • link 2.6 years ago by Mark ★ 1.5k

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hisat2  -x /home/k/Desktop/arabid/fastq/2d/arabidindx/index  -1 /home/k/Desktop/arabid/fastq/2d/SRR8511589_1.fastq.gz -2 /home/k/Desktop/arabid/fastq/2d/SRR8511589_2.fastq.gz  -S /home/k/Desktop/arabid/fastq/2d/hisatout/SRR8511589.sam

ADD REPLY • link updated 2.6 years ago by GenoMax 141k • written 2.6 years ago by reza • 0

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thanks a lot

ADD REPLY • link 2.6 years ago by reza • 0

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Do you get the error right away or after some time?

ADD REPLY • link 2.6 years ago by GenoMax 141k

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thank u.solved

ADD REPLY • link 2.6 years ago by reza • 0

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