QTL analysis for RNAseq using WASP
Entering edit mode
2.2 years ago
Kim ▴ 10

Hello I was advised to do a QTL analysis of our RNAseq data using WASP. I'm been reading about this tool and wondering:

  • Would it be possible to do this type of analysis if my RNAseq are all from tumor samples (papilloma and carcinoma of the same tissue) and there's no control RNA? I think it won't be possible to do a Combined Haplotype test if we just have 1 type of haplotype (tumor).
  • I have 4 carcinoma and 17 papilloma samples. Is that a good size for reliable result with this type of analysis?

Thank you for helping.

QTL WASP control samples RNAseq • 464 views

Login before adding your answer.

Traffic: 1998 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6