merge bfiles with different allele format by plink
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4 weeks ago
khn ▴ 130

Hello,

I want to merge two bfiles using plink. However, one bfile is written as below.


1 rs123 0 123 A G

1 rs234 0 234 G T


The other file is as below.


1 rs123 0 123 1 2

1 rs234 0 234 1 2


All SNPs are like this, so I cannot remove those SNPs to merge. Any ideas would be appreciated. Thank you!

plink merge bfile SNP • 84 views
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