How to calculate phred score of fastq files?
0
0
Entering edit mode
4 months ago

Hello All,

I want to calculate the Phred score for given fastq file. Is there any command line tools are available?

For example

Sample Name Phred score

sample1_R1.fq 36.24

sample1_R2.fq 37.35

Sample2_R1.fq 35.85

Sample2_R2.fq 35.10

please help

linux phred fastq • 204 views
ADD COMMENT
0
Entering edit mode

Check the explanation in this thread (yes there are two solutions) : FASTQ Phred33 average base quality score

ADD REPLY

Login before adding your answer.

Traffic: 2921 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6