How to calculate phred score of fastq files?
0
0
Entering edit mode
2.6 years ago

Hello All,

I want to calculate the Phred score for given fastq file. Is there any command line tools are available?

For example

Sample Name Phred score

sample1_R1.fq 36.24

sample1_R2.fq 37.35

Sample2_R1.fq 35.85

Sample2_R2.fq 35.10

please help
linux phred fastq • 1.2k views
ADD COMMENT •
0
Entering edit mode

Check the explanation in this thread (yes there are two solutions) : FASTQ Phred33 average base quality score

ADD REPLY •

Login before adding your answer.

Similar Posts
Loading Similar Posts
Traffic: 3131 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6