I want to reconstruct the demographic history of the polyploid species, using genome sequences. But multiple sequentially Markovian coalescence (MSMC) is suitable only for diploid organisms, as stated in the original article. SMC++ also seems to be used only for diploid organisms, if I'm not mistaken. Could you please suggest similar approaches for polyploid organisms (I am interested in polyploid plants)?
Best regards, Poecile