R script end to end meta analysis geo download data
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2.8 years ago
xinhui.wang ▴ 550

Hi all, I am looking for an efficient workflow in R which could run the meta-analysis (like plot, heatmap, test) on the data downloaded from the GEO dataset (human genome, HumanMethylation, etc). I know there is some end-to-end workflow on the crossing R work packages. could someone give me a suggestion which one you think is the more efficient one? Thanks in advance! Best, Xinhui

microarray. workflow • 643 views
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2.8 years ago

GEO has a function Geo2R (https://www.ncbi.nlm.nih.gov/geo/geo2r/) where you can get some basic plots from the data.

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