Use a command on multiple files
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4 weeks ago
utkarsh.sood ▴ 40

Hi,

I want to give two files as input in the following command using loop and generate two respective files as output

File 1: File1_1.fastq.gz File 2: File1_2.fastq.gz

bbduk.sh -Xmx1g in1= in2= out1= out2= ref=adapters.fa ktrim=r

Thanks

multiple files loop • 119 views
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