Deleted:Codon based alignment for detecting positive selection
0
1
Entering edit mode
21 days ago
mnsp088 ▴ 60

Hi everyone,

I'm trying to apply some site models to detect positive selection in proteins using ete3 evol. After a lot of troubleshooting, I realized it requires a 'codon based alignment'. I currently just have a list of protein sequences in one file and their alignment in another file, how can I generate a 'codon based alignment'. Has anyone had this issue before?

Thanks.

paml slr alignment codeml ete • 100 views
ADD COMMENT
This thread is not open. No new answers may be added
Traffic: 959 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6