How to show relabel sub cluster on the original cluster in Seurat
1
0
Entering edit mode
26 days ago
bt20022 • 0

Hi all!

I have some data that I've been clustering using Seurat. I ended up with 30 clusters, but I subset 3 of these clusters are reclustered them in order to get more specific cell types. I now have 7 clusters in this subset, but want to relabel the cells in the original object with the 30 clusters. Is this possible? Would really appreciate some help!

scRNA-seq seurat cluster clustering • 223 views
ADD COMMENT
0
Entering edit mode
24 days ago
Pratik Mehta ▴ 590

Generally you should be able to use SetIdent().

I wrote a concise tutorial on this here: https://github.com/satijalab/seurat/discussions/4137#discussioncomment-407760

Also look here for additional details on subclustering: https://github.com/satijalab/seurat/discussions/4122

Hope this helps!

ADD COMMENT

Login before adding your answer.

Traffic: 2962 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6