Problem loading my multifasta

Question

[ricardo ariel]

Hello All,

I have problem loading my multifasta and running rhierbaps. I I can see that the fasta.file.name is empty.

library(rhierbaps)
fasta.file.name <- "clean_hlr.fasta"
fasta.file.name <- system.file("extdata", "clean_hlr.fasta", package = "rhierbaps")
fasta.file.name
[1] ""
snp.matrix <- load_fasta(fasta.file.name)
Error in load_fasta(fasta.file.name) :
Invalid msa or the file does not exist!

How do I have to

[GenoMax]

Invalid msa or the file does not exist!

Looks like the program needs a multiple sequence alignment (MSA) file NOT a simple multi-fasta file. So do an MSA first.