Chip seq remove the genes which has very low enrichment
0
1
Entering edit mode
22 days ago
Lalita ▴ 10

Hello I am doing a metagene analysis chipseq for three set of (data1(1000genes), data2(1500), data3(10000)) of gene list in which I wanted compare this three groups of genes TSS and genebody regions which group has the higher enrichment any one suggest me how can I do this and before comparison average accross genes in TSS or genebody I wanted remove the genes which are very low enrichment acrross TSS and genebody any tool or suggestions how can I proceed.

  1. My gene list number is vary different is it good idea to compare this gene list like this or is there any method I can adopt

I am new to chip seq data analysis please help me

Thank you

Deeptools ChIP-Seq Sequencing R • 91 views
ADD COMMENT

Login before adding your answer.

Traffic: 1580 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6