Entering edit mode
3.0 years ago
bioinformatics
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40
Hi guys!
Does anyone know how to remove the header below because it keeps coming up with Error in Math.data.frame(Microarray.MSCs): non-numeric-alike variable(s) in data frame: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
Also, does anyone know what the R codes would be to perform microarray analysis in R. I'm following this https://www.semel.ucla.edu/sites/default/files/coppola-lab/CoppolaExampleCode.pdf workflow.
head(Microarray.MSCs)
V1 V2 V3 V4 V5 V6 V7 V8 V9
1 ProbeName Day 0-1 Day 0-2 Day 0-3 Day 7-1 Day 7-2 Day 7-3 Day 14-1 Day 14-2
2 A_04_P063001 666.636 1696.1885 1557.941 6252.668 2919.4412 5536.268 12564.507 10459.793
3 A_04_P027222 134.40279 163.9967 150.52025 1936.827 583.9774 1742.507 1738.8904 1738.4939
4 A_04_P054052 79.53051 149.24582 276.84015 351.02386 332.94275 482.743 406.8957 289.9612
5 A_04_P043272 4.9999995 7.891682 20.59979 66.30415 57.350246 65.05819 46.807858 47.90688
6 A_04_P082033 4.9999995 5.562969 22.03437 28.541346 21.72589 45.44614 22.657038 9.8729105
V10 V11 V12 V13 V14
1 Day 14-3 Day 21-1 Day 21-2 Day 21-3 GeneSymbol
2 10751.576 715 9.59 5940.33 6241.056 LOC100346751
3 1691.0352 899.52216 653.9722 702.0644
4 411.41324 154.12201 126.39794 397.99387
5 45.024284 29.569155 26.168947 69.53682 LOC100342109
6 16.986622 7.7133107 4.9999995 57.2613
Thankyou!
Duplicate of Microarray analysis in R - target.txt,file,Sample info
Microarray analysis in R- target.txt,file, Sample info was my post. Thankyou for your help. The second command came up as an error. Error in x[[jj]][iseq] <- vjj : replacement has length zero
Ah yeah, edited it. My bad.
Ok, great, thankyou.