mixcr targetQualities

Question

[evcon]

Hi,

I'm using mixcr to do tcr repertoire analysis and the output has a targetQualities column, but I'm not sure what format it is. It looks like a phred score, but I'm not sure and the documentation doesn't say. Anyone know what it is?

Thanks!

Answer 1

[mizraelson]

Hi, yes its a phred score for the target sequence (the region used for clonotype assembly).

Please feel free to visit out new documentation portal here:

https://docs.milaboratories.com/mixcr/reference/mixcr-export/#examples