Finding regulatory elements for coexpressed genes

Question

[hannicho]

Hello.

I have found coexpressed genes or modules. I wanted to find out the Transcription factors that regulate genes of the same module. Do you know if there are computational methods or R packages that will allow me fo figure out the TF regulator. Please let me know if you do.

Thank you

[Papyrus]

For a very quick exploration you can input them into Enrichr, which will output enrichments in many databases of TFs associated to your genes.

[zizigolu]

Putting a network of co-expressed genes in Cytoscape, by iRegulon you can look at TFs