Ete3 evol results
0
0
Entering edit mode
2.5 years ago
mnsp088 ▴ 100

Hi!

Does anyone know where ete3 evol stores the results of the likelihood ratio test (LRT), specifically the p-value? I can see the results on the command line in verbose, for example:

LRT

Null model | Alternative model | p-value
=================================================|===============================================|============ M1~7b39f028f15bcf5b4b4300598f79fe3b | M2~59732ae49e13dec10b5e06c9a439ebdb | 0.000026**

However, i've searched every file in the output directory 'results' and cannot find the LRT results anywhere (specifically the p-value of the LRT test).

Here is the command i'm using to run it:

ete3 evol -t tree.nw --alg tree_used_alg.fa -o results/ --models M1 M2 --image figure.pdf

Thanks!

paml LRT ete3 • 1.2k views
ADD COMMENT
0
Entering edit mode

It seems simple enough to redirect the screen output into a file and save your p-value rather than trying to find if any file has it already.

ADD REPLY

Login before adding your answer.

Traffic: 2629 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6