Cannot find reasonable band width. Continue anyway
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3 months ago

i'm running a bioinformatic tool called ltr finder, when i runned the command bellow

   ltr_finder $DATA/$organis_name.fna  -s $tRNA/${organis_name}_trna.fasta -a $LTR_Finder/ps_scan  -w2 -E -C > $ltr_table/$organis_name.table

with the $organis_name changes from one genome to another.

in some genomes i don't get this message and in some i get it.

so my question is what does this message[aln_local_core] Cannot find reasonable band width. Continue anyway means.? if the tools continue anyway would that affect the result.?

ltrfinder genomics genome trna bioinformatics • 151 views
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