How can I export raw count profile from DiffBind to be analyzed on DESeq2 separately?
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8 weeks ago
mrj ▴ 70

I am performing some ATAC-seq analysis. I would like to export the output files as a raw abundance profile so that I can analyze them on DESeq2 separately.

I am aware that DiffBind contains DESeq2 internally. However, I would like to perform DESeq2 part outside of DIffBind.

Could you please, show me how to export these files properly?

raw DiffBind ATAC-seq profile export DESeq2 count • 380 views
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