Entering edit mode
2.5 years ago
jiahui
•
0
my command :
bowtie2 -x Guy11 -1 Guy11_FDSW210137750-1r_1.clean.fq.gz -2 Guy11_FDSW210137750-1r_2.clean.fq.gz | samtools sort -O bam -@ 5 -o Guy11.bam
and then it got error sort: invalid option -- 'O' open: No such file or directory [bam_sort_core] fail to open file bam Can people help me ?
you are right! I used conda to install samtools and success!