Entering edit mode
20 months ago
Lior • 0
Hey all, I wrote a script in python that gets the SRR ids from a SRP id and then downloads all FASTQ files for every SRR. How can it only work on some SRRs?
For example, SRP000124 provides these:
and downloads the FASTQ files as it should. But, SRP234963 which provides much more SRRs:
SRR10600874 SRR10600875 . . . SRR10600943 SRR10600944
gets stuck in the first SRR (SRR10600874) download.
Nothing crashes, it just gets stuck after executing the fasterq-dump command and waits forever.
The actual command is
"fasterq-dump " + srr_id + ' --split-3' + ' -O /output/'
Any information you can provide for me will be much appreciated, as you can tell this is my first project in this subject.