Alignment of genomes and get statistics about alignment

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2.5 years ago

Picasa ▴ 640

Hi,

I have 3 genomes: 1 reference and 2 query. I would like to know which of the 2 query is more similar to the reference.

I use to use nucmer for genome alignment but I can't find a way to get statistics about global percentage of identity ... or maybe I missed something ?

Do you have any recommendation for doing that ?

Thanks

genome • 842 views

ADD COMMENT • link updated 2.5 years ago by manaswwm ▴ 490 • written 2.5 years ago by Picasa ▴ 640

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whole genome alignment using nucmer

ADD REPLY • link 2.5 years ago by manaswwm ▴ 490

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I know how to align genome with nucmer and got the plot etc. But I am looking for alignment statistics

ADD REPLY • link 2.5 years ago by Picasa ▴ 640

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Maybe the answer from one of the user is useful for you, hence the comment

ADD REPLY • link 2.5 years ago by manaswwm ▴ 490

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