extract specific information from fastq and sam files
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2 days ago
Sara ▴ 180

I have a fastq files which looks like this:

7090-001-001_CTGATCGT-GCGCATAT_L004_R1.fastq.gz
7090-001-001_CTGATCGT-GCGCATAT_L004.sam

I need to extract the following information from the file:

1- Read Group Library Identifier
2- Read Group Platform; usually Illumina
3- Read Group Platform Unit
4- Read Group Sample

do you know how I can get above 4 info?

sequencing • 84 views
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Entering edit mode
2 days ago
GenoMax 107k

See for more information: Obtaining read group information from the Fastq file

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