Question

Can not plot degree distribution in Cytoscape Network Analyzer on logscale

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Entering edit mode

2.5 years ago

bhodai • 0

I am using Cytoscape 3.9.0. When I tried - Tools > Analyze Network, the following window poped-up enter image description here

When I clicked on 'Node Degree Distribution', 'Betweenness by Degree' I got the following windows enter image description here

I want to generate a plot like this enter image description here

I would really appreciate if anyone could help

Cytoscape • 1.1k views

ADD COMMENT • link updated 2.5 years ago by scooter ▴ 620 • written 2.5 years ago by bhodai • 0

score 0 · Answer 1 · 2021-10-21

Greetings, I have two suggestions for you. First, to solve your immediate problem, I would export your node table as a csv and read it into excel. The degree value is added as a column in the node table and you can easily plot it in Excel. Second, I would definitely submit a feature request to improve our plotting. We have an active project to replace CyChart with a newer package and now would be a good time to request log plots as a feature.

-- scooter