Estimating the level of cytokine and chemokine from BulkRNAseq count matrix
Entering edit mode
11 months ago
synat.keam ▴ 60

Dear Seniors/members,

Hope you're doing great. I believe there are members of Biostar doing some immuno-oncology projects through RNA Sequencing.

Cytokines/chemokines are the protein secreted by immune cells that serve as languages for immune cells to talk to each other during the responding process to invading pathogens / cancer.

There are some algorithm such as Cibersort, MCP-counter, which can be used to estimate the fraction of immune cells from abundance of bulk RNAseq.

However, I'm wondering whether anyone knows whether there is any R package or web-interface that can be used to estimate the level of cytokine from BulkRNAseq count-matrix?

Looking forward to hearing from all members and senior soon.

Kind Regards,


Cytokine RNAseq chemokines • 286 views

Login before adding your answer.

Traffic: 670 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6