GEO scRNA-seq entry with cell type information?
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7 weeks ago

Hello,

I am trying to look for a scRNA-seq dataset hosted in GEO that, apart of the common files genes.tsv, barcodes.tsv and matrix.mtx, also has a file mapping barcode to cell types (as annotated by the paper). I have been trying to find one example of this but have been unsuccessful. Does anybody know of one such entry?

Thanks a lot!!

scRNA-seq • 233 views
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Entering edit mode
7 weeks ago

If it is not in the GEO record, it may be in the following locations:

  • some other public record of the data
  • in a main or supplementary table in the associated publication
  • in the [private] possession of the lead or first [or another] author, in which case you should send them a professional e-mail to request it

Kevin

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Entering edit mode

Thank you for the reply! I was aware of that, I was just wondering if there exists a GEO entry that contained that information within the entry itself, not within the paper. I feel like there should be at least some studies that include that. But I appreciate your answer so much!

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