Question

non-unique values when setting 'row.names' error in DESeq2

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2.5 years ago

Sai Prasada • 0

Hi Everyone!

I am trying to run the DESeqDataSetFromMatrix() command using a specific dataset but I keep getting the following error.

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For some reason, R (version 4.0.5) is trying to assign the first column of my DataFrame to be the row names, even though I have already assigned the row names to be the gene names.

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Also, here is a sampling of the data that I'm working with.

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I am currently working in R version 4.0.5. Any help or pointers in the right direction would be greatly appreciated :)

DESeq2 R • 1.7k views

ADD COMMENT • link 2.5 years ago by Sai Prasada • 0

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can you try without tidy=TRUE ?

ADD REPLY • link 2.5 years ago by cpad0112 21k

score 2 · Accepted Answer · 2021-10-19

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2.5 years ago

Basti ★ 2.0k

Remove tidy=TRUE, because tidy option is "for matrix input: whether the first column of countData is the rownames for the count matrix"