Mouse RefCDS for dNdScv package
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Entering edit mode
3 months ago
isd1989 • 0

Hi all

I am trying to run the dNdScv package to identify mutations that are under positive selection. The dataset I am working with is sequencing data from mouse tumours using a targeted gene panel.

The default for the package is using human data. Does anyone have a RefCDS object already for mouse (mus musculus) that I can use to apply the algorithm to my data?

Here is the page for the package: dNdScv

Thank you!

musculus dndscv mus refcds mouse • 264 views
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Entering edit mode
9 weeks ago

Hello

Thank you for your interest in dNdScv. You can find a number of RefCDS for other species, including mouse, in this link: https://github.com/im3sanger/dndscv_data/tree/master/data

You can also use this tutorial to generate your own RefCDS for any species or transcript dataset of interest.

Best, Inigo

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Thank you Inigo, and thank you for all your work with this package!

Best wishes.

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