I have two samples that were sequenced using pacbio technology. These samples are different in terms of their shearing methods. I also have SMRTLink installed through command line interface.
I want to run some primary analysis to compare these samples, for example coverage bias, alignment summary metrics, and any thing else that can help with understanding differences between these samples.
I have unaligned bam file, pbi and xml files for each sample. I looked into pacbio guid but I couldn't find anything that helps me with these metrics.
Is there any tool I can use within SMRTLink that can do these analysis?