vcf file indiviual column interpretation
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5 weeks ago
Nai ▴ 20

QUAL 2460.98 FILTER PASS INFO ASP;CAF=0.9778,0.02216;COMMON=1; FORMAT GT:AD:AF:DP:F1R2:F2R1:GQ:PL sample1 0/0:2,0:.:2:.:.:6:0,6,57 sample2 0/0:30,0:.:30:.:.:90:0,90,1012 sample3 0/0:24,0:.:24:.:.:72:0,72,779 sample4 0/0:29,0:.:29:.:.:86:0,86,976

I would like to know what is the each sample explaining. The result belong to 1 rsid

reference to with rsid file interpretation vcf • 184 views
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Entering edit mode
5 weeks ago
4galaxy77 ★ 1.2k

This explains it pretty well https://en.wikipedia.org/wiki/Variant_Call_Format

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