problem with Verify installation in 10x genomics
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Entering edit mode
5 weeks ago
Suko • 0

hi all

I am very new to 10x genomics. I installed cellranger. but I tried to verify the installation ($export PATH=/opt/cellranger-6.1.1:$PATH \$ cellranger testrun --id=tiny ), I am getting error, when I test run.Please any suggestions would be appreciated.

error:::Caused by: Error creating MRO invocation: stat rna/sc_rna_counter_cs.mro: no such file or directory

https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/installation

ranger error cell • 148 views
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Entering edit mode
5 weeks ago
GenoMax 109k

Do you have write permissions to the directory where you are running this from? Looks like you don't so change to a directory where you can write and try again.