Running DEseq2 on galaxy having error for invalid row.names length
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6 weeks ago

While running DEseq2 on Galaxy I always run into this error, and I have no idea what does it mean, the datasets have the same length and all the same structure.

This job was resubmitted to the queue because it encountered a tool detected error condition on its compute resource. Error in .rowNamesDF<-(x, value = value) : invalid 'row.names' length Calls: rownames<- ... row.names<- -> row.names<-.data.frame -> .r

Thank you for advices!

Galaxy RNAseq DEseq2 • 210 views
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No one could give an advice without any detail about your input file. However, it seems that your data format is not same as the example. See the Galaxy tutorial: https://galaxyproject.org/tutorials/rb-rnaseq/#loading-the-data-and-create-dataset-collections (Search for Deseq2 section)

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6 weeks ago
GenoMax 110k

If you need Galaxy specific help then please post this in their help forum: https://help.galaxyproject.org/

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