Volcano 3D plot on single cell seurat data ?
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11 months ago
Ondina ▴ 50

I'm currently searching for a way of using volcano3D on single cell data analyzed with Seurat. Volcano3D looks like a fun and interesting method for DE analysis representation but I don't know which is the right way to do it from a single cell seurat object? EnhancedVolcano works like a charm with DE analysis by Seurat and I wanted to know if there is a similar way to get volcano3d working with this kind of data.

This is how Volcano3D works:

1st tutorial

Tutorial on their website

single-cell volcano3d seurat • 540 views
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What would the 3rd dimension be, after log(pvalue) and log(odds)?

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Entering edit mode
11 months ago
Ondina ▴ 50

Currently searching for a solution on this Volcano3D's issue, it's working more or less thanks to Katriona Goldmann, one of the Volcano3D developpers, I'll make some few adjustements:

Volcano 3D github issues section

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