how to retrieve protein sequence from locus given / how to convert locus to protein ID
0
0
Entering edit mode
4 weeks ago
Nelo • 0

Hello

Is there any way to get protein sequences from given locus, for e.g.,

Gene name            locus        
PvPIP2;4              Phvul.005G135300
PvTIP1;3              Phvul.008G014900
PvTIP2;2              Phvul.010G147100
PvNIP1;4             Phvul.002G242300
PvSIP1;1             Phvul.001G097000

Or can i convert the locus to protein ID

conversion protein locus • 195 views
ADD COMMENT
0
Entering edit mode

What organism are these ID's from? Also the source these came from.

ADD REPLY
0
Entering edit mode

ORGN is common bean DOI 10.1007/s00438-015-1038-2

ADD REPLY
0
Entering edit mode

NCBI is not using either of those ID's so if you need to keep them in context then NCBI's genome entry will not help.

Ensembl plants seems to be using a different variation of that locus name. So your best bet is to go to the source where those ID's came from.

ADD REPLY

Login before adding your answer.

Traffic: 2836 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6