how to retrieve protein sequence from locus given / how to convert locus to protein ID

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2.5 years ago

Nelo ▴ 20

Hello

Is there any way to get protein sequences from given locus, for e.g.,

Gene name            locus        
PvPIP2;4              Phvul.005G135300
PvTIP1;3              Phvul.008G014900
PvTIP2;2              Phvul.010G147100
PvNIP1;4             Phvul.002G242300
PvSIP1;1             Phvul.001G097000

Or can i convert the locus to protein ID

conversion protein locus • 897 views

ADD COMMENT • link updated 2.5 years ago by GenoMax 141k • written 2.5 years ago by Nelo ▴ 20

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What organism are these ID's from? Also the source these came from.

ADD REPLY • link 2.5 years ago by GenoMax 141k

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ORGN is common bean DOI 10.1007/s00438-015-1038-2

ADD REPLY • link 2.5 years ago by Nelo ▴ 20

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NCBI is not using either of those ID's so if you need to keep them in context then NCBI's genome entry will not help.

Ensembl plants seems to be using a different variation of that locus name. So your best bet is to go to the source where those ID's came from.

ADD REPLY • link 2.5 years ago by GenoMax 141k

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